No. words: 798; after pruning: 772


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 7.4 (1,1:368)  353  0.00 0.27 0.00  USDA003F_C03_BE425354As01P004F04F10F1_018.ab1        1   365 (29)  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1   (34)   370     5 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  180 nodes

 92 str. conn. components

Path
    1  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1   404 
  141    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   106 
  157  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1   248 
  185    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   150 
  189  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1   216 
  217    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   182 
  253  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1   152 
  293    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   258 
  297  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1   108 
  305    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   270 
  309  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1    96 
  313    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   278 
  321  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1    84 
  325    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   290 
  329  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1    76 
  337    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   302 
  357  C USDA003R_C03_BE425354As01P004F04F10R1_018.ab1    48 
  361    USDA003F_C03_BE425354As01P004F04F10F1_018.ab1   326 
Contig length: old 429, new 429

Contig length: old 429, new 429
New start: 0