No. words: 825; after pruning: 799


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.0 (1,1:394)  383  0.00 0.00 0.25  USDA003F_E03_BE425354At01P004F04F10F1_019.ab1        1   395 (16)  C USDA003R_E03_BE425354At01P004F04F10R1_019.ab1   (20)   394     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  198 nodes

 101 str. conn. components

Path
    1  C USDA003R_E03_BE425354At01P004F04F10R1_019.ab1   414 
   72    USDA003F_E03_BE425354At01P004F04F10F1_019.ab1    52 
   76  C USDA003R_E03_BE425354At01P004F04F10R1_019.ab1   339 
  216    USDA003F_E03_BE425354At01P004F04F10F1_019.ab1   196 
  228  C USDA003R_E03_BE425354At01P004F04F10R1_019.ab1   187 
  244    USDA003F_E03_BE425354At01P004F04F10F1_019.ab1   224 
  252  C USDA003R_E03_BE425354At01P004F04F10R1_019.ab1   163 
  264    USDA003F_E03_BE425354At01P004F04F10F1_019.ab1   244 
  268  C USDA003R_E03_BE425354At01P004F04F10R1_019.ab1   147 
  328    USDA003F_E03_BE425354At01P004F04F10F1_019.ab1   308 
  356  C USDA003R_E03_BE425354At01P004F04F10R1_019.ab1    59 
  364    USDA003F_E03_BE425354At01P004F04F10F1_019.ab1   344 
Contig length: old 430, new 431

Contig length: old 431, new 431
New start: 0