No. words: 1048; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.5 (1,1:393)  371  1.02 0.25 0.00  USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1        1   394 (115)  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   (144)   395     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   539 
  256    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   111 
  268  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   272 
  276    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   131 
  284  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   256 
  340    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   195 
  360  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   180 
  372    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   227 
  376  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   164 
  384    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   239 
  396  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   144 
  420    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   275 
  424  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   116 
  432    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   287 
  436  C USDA003R_G03_BE425354Ld01P004F04F10R1_020.ab1   104 
  464    USDA003F_G03_BE425354Ld01P004F04F10F1_020.ab1   319 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0