No. words: 1045; after pruning: 1019


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:393)  373  0.51 0.51 0.00  USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1        1   393 (113)  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1   (144)   395     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1   539 
  236    USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1    90 
  240  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1   300 
  272    USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1   126 
  316  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1   224 
  340    USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1   194 
  360  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1   180 
  372    USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1   226 
  376  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1   164 
  396    USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1   250 
  404  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1   136 
  432    USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1   286 
  464  C USDA003R_H03_BE425354Ld02P004F04F10R1_028.ab1    76 
  468    USDA003F_H03_BE425354Ld02P004F04F10F1_028.ab1   322 
Contig length: old 651, new 652

Contig length: old 652, new 652
New start: 0