No. words: 1051; after pruning: 1025


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.3 (1,1:394)  374  0.76 0.00 0.25  USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1        1   395 (116)  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1   (146)   394     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1   540 
  262    USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1   116 
  270  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1   271 
  354    USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1   208 
  362  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1   179 
  370    USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1   224 
  394  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1   147 
  406    USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1   260 
  414  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1   127 
  434    USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1   288 
  442  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1    99 
  454    USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1   308 
  466  C USDA003R_C04_BE425354Ld05P004F04F10R1_022.ab1    75 
  470    USDA003F_C04_BE425354Ld05P004F04F10F1_022.ab1   324 
Contig length: old 656, new 657

Contig length: old 657, new 657
New start: 0