No. words: 1054; after pruning: 1028


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.7 (1,1:394)  388  0.00 0.00 0.00  USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1        1   395 (146)  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   (118)   395     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  200 nodes

 102 str. conn. components

Path
    1  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   513 
  174    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1    56 
  182  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   332 
  194    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1    76 
  202  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   312 
  234    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   116 
  242  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   272 
  250    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   132 
  254  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   260 
  262    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   144 
  278  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   236 
  282    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   164 
  286  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   228 
  298    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   180 
  314  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   200 
  318    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   200 
  370  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   144 
  374    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   256 
  382  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   132 
  386    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   268 
  394  C USDA003R_D04_BE425354Ld06P004F04F10R1_030.ab1   120 
  398    USDA003F_D04_BE425354Ld06P004F04F10F1_030.ab1   280 
Contig length: old 659, new 659

Contig length: old 659, new 659
New start: 0