No. words: 1048; after pruning: 1022


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:393)  374  0.00 0.51 0.25  USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1        1   394 (117)  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   (142)   395     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  188 nodes

 96 str. conn. components

Path
    1  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   537 
  263    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   119 
  279  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   259 
  287    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   143 
  319  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   219 
  323    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   179 
  339  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   199 
  347    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   203 
  351  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   187 
  367    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   223 
  375  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   163 
  391    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   247 
  395  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1   143 
  427    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   283 
  483  C USDA003R_F04_BE425354Ld08P004F04F10R1_031.ab1    55 
  487    USDA003F_F04_BE425354Ld08P004F04F10F1_031.ab1   343 
Contig length: old 654, new 655

Contig length: old 655, new 655
New start: 0