No. words: 1051; after pruning: 1025


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 8.4 (1,1:393)  375  0.25 0.00 0.51  USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1        1   395 (147)  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   (116)   393     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  190 nodes

 97 str. conn. components

Path
    1  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   509 
  264    USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1   148 
  268  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   242 
  284    USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1   168 
  288  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   222 
  312    USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1   196 
  348  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   162 
  356    USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1   240 
  368  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   142 
  376    USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1   260 
  384  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   126 
  388    USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1   272 
  404  C USDA003R_H04_BE425354Ld10P004F04F10R1_032.ab1   106 
  408    USDA003F_H04_BE425354Ld10P004F04F10F1_032.ab1   292 
Contig length: old 657, new 658

Contig length: old 658, new 658
New start: 0