No. words: 753; after pruning: 727


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.4 (1,1:360)  308  1.72 0.86 0.29  USDA022F_C07_BE425354Td03P043G03P004F101F1_059.ab1        1   349 (0)  C USDA022R_C07_BE425354Td03P043G03P004F101R1_059.ab1   (41)   363    13 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  146 nodes

 75 str. conn. components

Path
    1  C USDA022R_C07_BE425354Td03P043G03P004F101R1_059.ab1   404 
Contig length: old 404, new 404

Contig length: old 404, new 404
New start: 0