No. words: 590; after pruning: 564


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    1    0.0 1.1 (1,1:346)  165  2.14 0.53 0.53  USDA022F_G07_BE425354Td07P043G03P004F101F1_051.ab1        2   188 (0)  C USDA022R_G07_BE425354Td07P043G03P004F101R1_051.ab1   (56)   346   160 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 1       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  80 nodes

 42 str. conn. components

Path
    1  C USDA022R_G07_BE425354Td07P043G03P004F101R1_051.ab1   402 
   67    USDA022F_G07_BE425354Td07P043G03P004F101F1_051.ab1    11 
   71  C USDA022R_G07_BE425354Td07P043G03P004F101R1_051.ab1   332 
   79    USDA022F_G07_BE425354Td07P043G03P004F101F1_051.ab1    23 
   83  C USDA022R_G07_BE425354Td07P043G03P004F101R1_051.ab1   320 
Contig length: old 402, new 402

Contig length: old 402, new 402
New start: 0