No. words: 860; after pruning: 834


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 4.9 (1,1:277)  257  0.00 0.36 0.36  USDA012F_G11_BE425978Ld01P004G06P004G12F1_083.ab1        1   275 (135)  C USDA012R_G11_BE425978Ld01P004G06P004G12R1_083.ab1   (172)   278     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  134 nodes

 69 str. conn. components

Path
    1  C USDA012R_G11_BE425978Ld01P004G06P004G12R1_083.ab1   450 
  295    USDA012F_G11_BE425978Ld01P004G06P004G12F1_083.ab1   122 
  311  C USDA012R_G11_BE425978Ld01P004G06P004G12R1_083.ab1   140 
  331    USDA012F_G11_BE425978Ld01P004G06P004G12F1_083.ab1   158 
Contig length: old 582, new 583

Contig length: old 583, new 583
New start: 0