No. words: 972; after pruning: 946


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.2 (1,1:429)  422  0.23 0.23 0.00  USDA030F_C03_BE426257As01P004H03P004H091F4_027.ab1        1   430 (55)  C USDA030R_C03_BE426257As01P004H03P004H091R4_027.ab1   (56)   431     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  210 nodes

 107 str. conn. components

Path
    1  C USDA030R_C03_BE426257As01P004H03P004H091R4_027.ab1   487 
  383    USDA030F_C03_BE426257As01P004H03P004H091F4_027.ab1   326 
  387  C USDA030R_C03_BE426257As01P004H03P004H091R4_027.ab1   101 
  424    USDA030F_C03_BE426257As01P004H03P004H091F4_027.ab1   367 
  428  C USDA030R_C03_BE426257As01P004H03P004H091R4_027.ab1    60 
  444    USDA030F_C03_BE426257As01P004H03P004H091F4_027.ab1   387 
  460  C USDA030R_C03_BE426257As01P004H03P004H091R4_027.ab1    28 
  464    USDA030F_C03_BE426257As01P004H03P004H091F4_027.ab1   407 
Contig length: old 542, new 542

Contig length: old 542, new 542
New start: 0