No. words: 1175; after pruning: 1149


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 9.1 (1,1:450)  429  0.89 0.44 0.00  USDA030F_H03_BE426257Ld02P004H03P004H091F4_017.ab1        1   450 (154)  C USDA030R_H03_BE426257Ld02P004H03P004H091R4_017.ab1   (119)   452     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  214 nodes

 109 str. conn. components

Path
    1  C USDA030R_H03_BE426257Ld02P004H03P004H091R4_017.ab1   571 
  468    USDA030F_H03_BE426257Ld02P004H03P004H091F4_017.ab1   347 
Contig length: old 724, new 725

Contig length: old 725, new 725
New start: 0