No. words: 376; after pruning: 350


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.2 -1.2 (1,1:137)  123  0.00 0.72 0.72  USDA024F_F12_BE442685Sn31P043A08P017B091F1_086.ab1        1   138 (43)  C USDA024R_F12_BE442685Sn31P043A08P017B091R1_086.ab1   (57)   138     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  62 nodes

 33 str. conn. components

Path
    1  C USDA024R_F12_BE442685Sn31P043A08P017B091R1_086.ab1   195 
   97    USDA024F_F12_BE442685Sn31P043A08P017B091F1_086.ab1    39 
  117  C USDA024R_F12_BE442685Sn31P043A08P017B091R1_086.ab1    79 
  137    USDA024F_F12_BE442685Sn31P043A08P017B091F1_086.ab1    79 
  161  C USDA024R_F12_BE442685Sn31P043A08P017B091R1_086.ab1    35 
  165    USDA024F_F12_BE442685Sn31P043A08P017B091F1_086.ab1   107 
Contig length: old 238, new 239

Contig length: old 239, new 239
New start: 0