No. words: 379; after pruning: 353


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -3.2 -3.2 (1,1:150)  126  0.00 1.99 0.66  USDA024F_C10_BE442685Ta13P043A08P017B091F1_076.ab1        1   151 (41)  C USDA024R_C10_BE442685Ta13P043A08P017B091R1_076.ab1   (34)   153     1 *
  Worst pair: offset 0 
LLR breakdown: discreps: -6.6 (<20 part: -0.1 (#=1), >20:-6.5 (#=3); in HQ: -6.6, out HQ 0.0), match: 3.3  total: -3.3  126  0.00 1.99 0.66  USDA024F_C10_BE442685Ta13P043A08P017B091F1_076.ab1        1   151 (41)  C USDA024R_C10_BE442685Ta13P043A08P017B091R1_076.ab1   (34)   153     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-3.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  64 nodes

 34 str. conn. components

Path
    1  C USDA024R_C10_BE442685Ta13P043A08P017B091R1_076.ab1   187 
   88    USDA024F_C10_BE442685Ta13P043A08P017B091F1_076.ab1    51 
  108  C USDA024R_C10_BE442685Ta13P043A08P017B091R1_076.ab1    80 
  128    USDA024F_C10_BE442685Ta13P043A08P017B091F1_076.ab1    91 
  148  C USDA024R_C10_BE442685Ta13P043A08P017B091R1_076.ab1    40 
  156    USDA024F_C10_BE442685Ta13P043A08P017B091F1_076.ab1   119 
Contig length: old 228, new 229

Contig length: old 229, new 229
New start: 0