No. words: 330; after pruning: 304


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 1.3 (1,1:89)   79  0.00 0.00 0.00  USDA024F_A11_BE442685Ta19P043A08P017B091F1_095.ab1        1    87 (96)  C USDA024R_A11_BE442685Ta19P043A08P017B091R1_095.ab1   (57)    90     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  44 nodes

 24 str. conn. components

Path
    1  C USDA024R_A11_BE442685Ta19P043A08P017B091R1_095.ab1   147 
   78    USDA024F_A11_BE442685Ta19P043A08P017B091F1_095.ab1    21 
   86  C USDA024R_A11_BE442685Ta19P043A08P017B091R1_095.ab1    62 
   98    USDA024F_A11_BE442685Ta19P043A08P017B091F1_095.ab1    41 
Contig length: old 240, new 240

Contig length: old 240, new 240
New start: 0