No. words: 370; after pruning: 344


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -0.3 -0.3 (1,1:139)  121  0.00 0.00 1.46  USDA024F_C11_BE442685Ta21P043A08P017B091F1_091.ab1        4   140 (43)  C USDA024R_C11_BE442685Ta21P043A08P017B091R1_091.ab1   (52)   135     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.3       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  62 nodes

 33 str. conn. components

Path
    1  C USDA024R_C11_BE442685Ta21P043A08P017B091R1_091.ab1   187 
  128    USDA024F_C11_BE442685Ta21P043A08P017B091F1_091.ab1    79 
  132  C USDA024R_C11_BE442685Ta21P043A08P017B091R1_091.ab1    56 
  157    USDA024F_C11_BE442685Ta21P043A08P017B091F1_091.ab1   109 
Contig length: old 230, new 231

Contig length: old 231, new 231
New start: 0