No. words: 1248; after pruning: 1222


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 13.0 (1,1:587)  583  0.00 0.00 0.00  USDA002F_C03_BE442716As01P004A02A08F1_018.ab1        1   588 (39)  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   (33)   588     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   621 
   97    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1    64 
  113  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   509 
  133    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   100 
  137  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   485 
  153    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   120 
  181  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   441 
  213    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   180 
  221  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   401 
  233    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   200 
  241  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   381 
  249    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   216 
  309  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   313 
  325    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   292 
  337  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   285 
  345    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   312 
  353  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   269 
  369    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   336 
  389  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   233 
  421    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   388 
  501  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1   121 
  561    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   528 
  569  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1    53 
  577    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   544 
  585  C USDA002R_C03_BE442716As01P004A02A08R1_018.ab1    37 
  601    USDA002F_C03_BE442716As01P004A02A08F1_018.ab1   568 
Contig length: old 660, new 660

Contig length: old 660, new 660
New start: 0