No. words: 1247; after pruning: 1221


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.7 (1,1:592)  585  0.00 0.00 0.00  USDA002F_D03_BE442716As02P004A02A08F1_026.ab1        1   590 (35)  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   (29)   593     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  296 nodes

 150 str. conn. components

Path
    1  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   622 
   41    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1    12 
   45  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   578 
   61    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1    32 
   65  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   558 
   73    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1    44 
   85  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   538 
   93    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1    64 
  113  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   510 
  117    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1    88 
  137  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   486 
  145    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   116 
  193  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   430 
  221    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   192 
  225  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   398 
  229    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   200 
  277  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   346 
  301    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   272 
  385  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   238 
  405    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   376 
  409  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   214 
  417    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   388 
  445  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   178 
  477    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   448 
  489  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   134 
  501    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   472 
  517  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1   106 
  521    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   492 
  533  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1    90 
  557    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   528 
  561  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1    62 
  593    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   564 
  597  C USDA002R_D03_BE442716As02P004A02A08R1_026.ab1    26 
  601    USDA002F_D03_BE442716As02P004A02A08F1_026.ab1   572 
Contig length: old 654, new 654

Contig length: old 654, new 654
New start: 0