No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:577)  571  0.00 0.00 0.00  USDA002F_E03_BE442716At01P004A02A08F1_019.ab1        1   578 (38)  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   (35)   578     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  290 nodes

 147 str. conn. components

Path
    1  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   613 
   71    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1    36 
   75  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   539 
   83    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1    48 
   99  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   515 
  119    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1    84 
  135  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   479 
  143    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   108 
  207  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   407 
  223    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   188 
  251  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   363 
  255    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   220 
  283  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   331 
  287    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   252 
  343  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   271 
  367    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   332 
  475  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1   139 
  539    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   504 
  543  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1    71 
  551    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   516 
  555  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1    59 
  595    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   560 
  603  C USDA002R_E03_BE442716At01P004A02A08R1_019.ab1    11 
  607    USDA002F_E03_BE442716At01P004A02A08F1_019.ab1   572 
Contig length: old 651, new 651

Contig length: old 651, new 651
New start: 0