No. words: 1229; after pruning: 1203


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 12.4 (1,1:585)  576  0.00 0.00 0.00  USDA002F_F03_BE442716At02P004A02A08F1_027.ab1        1   583 (28)  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   (32)   586     4 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  294 nodes

 149 str. conn. components

Path
    1  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   618 
   60    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1    28 
   64  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   555 
   68    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1    36 
   76  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   543 
   88    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1    56 
  112  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   507 
  120    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1    88 
  132  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   487 
  144    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   112 
  164  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   455 
  172    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   140 
  180  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   439 
  184    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   152 
  188  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   431 
  200    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   168 
  204  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   415 
  220    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   188 
  260  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   359 
  264    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   232 
  288  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   331 
  316    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   284 
  388  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   231 
  412    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   380 
  444  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   175 
  472    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   440 
  488  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   131 
  496    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   464 
  512  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1   107 
  552    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   520 
  556  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1    63 
  572    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   540 
  576  C USDA002R_F03_BE442716At02P004A02A08R1_027.ab1    43 
  588    USDA002F_F03_BE442716At02P004A02A08F1_027.ab1   556 
Contig length: old 643, new 643

Contig length: old 643, new 643
New start: 0