No. words: 1491; after pruning: 1465


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:628)  610  0.00 0.16 0.32  USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1        1   630 (127)  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1   (105)   629     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  308 nodes

 156 str. conn. components

Path
    1  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1   734 
  161    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1    56 
  169  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1   566 
  181    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1    76 
  229  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1   506 
  233    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1   128 
  277  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1   458 
  317    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1   212 
  481  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1   254 
  501    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1   396 
  593  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1   142 
  649    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1   544 
  653  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1    82 
  669    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1   564 
  677  C USDA002R_H03_BE442716Ld02P004A02A08R1_028.ab1    58 
  685    USDA002F_H03_BE442716Ld02P004A02A08F1_028.ab1   580 
Contig length: old 862, new 862

Contig length: old 862, new 862
New start: 0