No. words: 1508; after pruning: 1482


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.9 (1,1:633)  604  0.63 0.16 0.31  USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1        1   635 (136)  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   (103)   634     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  304 nodes

 154 str. conn. components

Path
    1  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   737 
  157    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1    53 
  173  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   565 
  185    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1    81 
  201  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   537 
  209    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   105 
  221  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   517 
  233    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   129 
  261  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   477 
  269    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   165 
  277  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   461 
  317    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   213 
  337  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   401 
  361    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   257 
  385  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   353 
  416    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   312 
  484  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   254 
  532    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   428 
  536  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   202 
  568    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   464 
  588  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   150 
  592    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   488 
  620  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1   118 
  676    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   572 
  680  C USDA002R_B04_BE442716Ld04P004A02A08R1_029.ab1    58 
  688    USDA002F_B04_BE442716Ld04P004A02A08F1_029.ab1   584 
Contig length: old 874, new 875

Contig length: old 875, new 875
New start: 0