No. words: 1479; after pruning: 1453


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.8 (1,1:628)  614  0.00 0.00 0.32  USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1        1   630 (116)  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   (105)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   733 
  145    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1    40 
  149  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   585 
  161    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1    56 
  169  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   565 
  177    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1    72 
  185  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   549 
  209    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   104 
  213  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   521 
  233    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   128 
  253  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   481 
  265    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   160 
  273  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   461 
  317    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   212 
  321  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   413 
  325    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   220 
  333  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   401 
  345    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   240 
  349  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   385 
  357    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   252 
  365  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   369 
  409    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   304 
  417  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   317 
  425    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   320 
  433  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   301 
  509    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   404 
  521  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   213 
  577    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   472 
  581  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   153 
  585    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   480 
  601  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1   133 
  645    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   540 
  649  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1    85 
  661    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   556 
  665  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1    69 
  677    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   572 
  693  C USDA002R_C04_BE442716Ld05P004A02A08R1_022.ab1    41 
  701    USDA002F_C04_BE442716Ld05P004A02A08F1_022.ab1   596 
Contig length: old 850, new 851

Contig length: old 851, new 851
New start: 0