No. words: 1492; after pruning: 1466


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.9 (1,1:626)  612  0.00 0.00 0.32  USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1        1   628 (135)  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   (103)   626     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   729 
  155    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1    52 
  163  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   567 
  171    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1    68 
  175  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   555 
  179    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1    76 
  195  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   535 
  199    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1    96 
  227  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   503 
  235    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   132 
  279  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   451 
  283    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   180 
  303  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   427 
  315    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   212 
  419  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   311 
  427    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   324 
  443  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   287 
  467    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   364 
  483  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   247 
  495    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   392 
  543  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   187 
  555    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   452 
  571  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   159 
  575    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   472 
  607  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1   123 
  647    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   544 
  659  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1    71 
  663    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   560 
  671  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1    59 
  675    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   572 
  683  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1    47 
  687    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   584 
  695  C USDA002R_D04_BE442716Ld06P004A02A08R1_030.ab1    35 
  703    USDA002F_D04_BE442716Ld06P004A02A08F1_030.ab1   600 
Contig length: old 865, new 866

Contig length: old 866, new 866
New start: 0