No. words: 1474; after pruning: 1448


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.1 (1,1:614)  597  0.16 0.00 0.32  USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1        1   616 (126)  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   (118)   614     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  302 nodes

 153 str. conn. components

Path
    1  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   732 
  162    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1    44 
  166  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   567 
  178    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1    60 
  202  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   531 
  206    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1    88 
  222  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   511 
  234    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   116 
  254  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   479 
  258    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   140 
  262  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   471 
  266    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   148 
  274  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   459 
  314    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   196 
  354  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   379 
  406    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   288 
  414  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   319 
  422    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   304 
  474  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   259 
  562    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   444 
  566  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1   167 
  642    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   524 
  646  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1    87 
  670    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   552 
  678  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1    55 
  686    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   568 
  694  C USDA002R_E04_BE442716Ld07P004A02A08R1_023.ab1    39 
  698    USDA002F_E04_BE442716Ld07P004A02A08F1_023.ab1   580 
Contig length: old 859, new 860

Contig length: old 860, new 860
New start: 0