No. words: 1500; after pruning: 1474


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.4 (1,1:628)  612  0.16 0.00 0.32  USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1        1   630 (138)  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   (104)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  310 nodes

 157 str. conn. components

Path
    1  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   732 
  152    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1    48 
  156  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   577 
  160    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1    56 
  168  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   565 
  180    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1    76 
  188  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   545 
  192    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1    88 
  220  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   513 
  236    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   132 
  276  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   457 
  288    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   184 
  300  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   433 
  304    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   200 
  424  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   309 
  432    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   328 
  440  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   293 
  448    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   344 
  456  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   277 
  468    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   364 
  476  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   257 
  488    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   384 
  496  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   237 
  512    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   408 
  604  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   129 
  608    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   504 
  616  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1   117 
  644    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   540 
  652  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1    81 
  672    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   568 
  676  C USDA002R_F04_BE442716Ld08P004A02A08R1_031.ab1    57 
  684    USDA002F_F04_BE442716Ld08P004A02A08F1_031.ab1   580 
Contig length: old 871, new 872

Contig length: old 872, new 872
New start: 0