No. words: 1466; after pruning: 1440


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 12.3 (1,1:628)  609  0.32 0.00 0.32  USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1        1   630 (130)  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   (78)   628     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  306 nodes

 155 str. conn. components

Path
    1  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   706 
  125    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1    47 
  129  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   578 
  157    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1    79 
  161  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   546 
  173    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1    95 
  177  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   530 
  185    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   107 
  197  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   510 
  209    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   131 
  225  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   482 
  233    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   155 
  245  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   462 
  249    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   171 
  257  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   450 
  289    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   211 
  305  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   402 
  309    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   231 
  325  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   382 
  381    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   303 
  389  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   318 
  405    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   327 
  425  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   282 
  441    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   363 
  449  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   258 
  541    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   463 
  549  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   158 
  561    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   483 
  569  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1   138 
  617    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   539 
  629  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1    78 
  665    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   587 
  669  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1    38 
  673    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   595 
  700  C USDA002R_G04_BE442716Ld09P004A02A08R1_024.ab1     9 
  704    USDA002F_G04_BE442716Ld09P004A02A08F1_024.ab1   626 
Contig length: old 837, new 838

Contig length: old 838, new 838
New start: 0