No. words: 1511; after pruning: 1485


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 11.8 (1,1:634)  615  0.31 0.00 0.31  USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1        1   636 (138)  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   (103)   634     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  312 nodes

 158 str. conn. components

Path
    1  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   737 
  180    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1    77 
  196  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   542 
  200    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1    97 
  208  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   530 
  212    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   109 
  224  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   514 
  232    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   129 
  260  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   478 
  268    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   165 
  280  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   458 
  312    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   209 
  444  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   294 
  456    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   353 
  484  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   254 
  496    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   393 
  584  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   154 
  600    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   497 
  608  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   130 
  616    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   513 
  620  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1   118 
  632    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   529 
  640  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1    98 
  648    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   545 
  664  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1    74 
  676    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   573 
  684  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1    54 
  688    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   585 
  700  C USDA002R_H04_BE442716Ld10P004A02A08R1_032.ab1    38 
  704    USDA002F_H04_BE442716Ld10P004A02A08F1_032.ab1   601 
Contig length: old 876, new 877

Contig length: old 877, new 877
New start: 0