No. words: 454; after pruning: 428


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -2.2 -2.2 (1,1:178)  157  0.00 1.67 1.11  USDA021F_C05_BE443332Ta11P043H05P004B021F1_043.ab1        1   180 (51)  C USDA021R_C05_BE443332Ta11P043H05P004B021R1_043.ab1   (42)   181     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  76 nodes

 40 str. conn. components

Path
    1  C USDA021R_C05_BE443332Ta11P043H05P004B021R1_043.ab1   223 
   98    USDA021F_C05_BE443332Ta11P043H05P004B021F1_043.ab1    53 
  122  C USDA021R_C05_BE443332Ta11P043H05P004B021R1_043.ab1   102 
  134    USDA021F_C05_BE443332Ta11P043H05P004B021F1_043.ab1    89 
  142  C USDA021R_C05_BE443332Ta11P043H05P004B021R1_043.ab1    82 
  146    USDA021F_C05_BE443332Ta11P043H05P004B021F1_043.ab1   101 
  162  C USDA021R_C05_BE443332Ta11P043H05P004B021R1_043.ab1    62 
  170    USDA021F_C05_BE443332Ta11P043H05P004B021F1_043.ab1   125 
Contig length: old 275, new 276

Contig length: old 276, new 276
New start: 0