No. words: 430; after pruning: 404


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    3   -2.1 -2.1 (1,1:168)  144  0.00 1.20 1.80  USDA021F_E05_BE443332Ta13P043H05P004B021F1_039.ab1        4   170 (38)  C USDA021R_E05_BE443332Ta13P043H05P004B021R1_039.ab1   (56)   166     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-2.1       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  1       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1  C USDA021R_E05_BE443332Ta13P043H05P004B021R1_039.ab1   222 
   98    USDA021F_E05_BE443332Ta13P043H05P004B021F1_039.ab1    43 
  122  C USDA021R_E05_BE443332Ta13P043H05P004B021R1_039.ab1   101 
  134    USDA021F_E05_BE443332Ta13P043H05P004B021F1_039.ab1    79 
  142  C USDA021R_E05_BE443332Ta13P043H05P004B021R1_039.ab1    81 
  146    USDA021F_E05_BE443332Ta13P043H05P004B021F1_039.ab1    91 
  154  C USDA021R_E05_BE443332Ta13P043H05P004B021R1_039.ab1    69 
  158    USDA021F_E05_BE443332Ta13P043H05P004B021F1_039.ab1   103 
Contig length: old 261, new 263

Contig length: old 263, new 263
New start: 0