No. words: 440; after pruning: 414


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.7 -1.7 (1,1:173)  157  0.00 1.72 0.57  USDA021F_F05_BE443332Ta14P043H05P004B021F1_037.ab1        1   174 (38)  C USDA021R_F05_BE443332Ta14P043H05P004B021R1_037.ab1   (52)   176     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.7       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C USDA021R_F05_BE443332Ta14P043H05P004B021R1_037.ab1   228 
   85    USDA021F_F05_BE443332Ta14P043H05P004B021F1_037.ab1    31 
   89  C USDA021R_F05_BE443332Ta14P043H05P004B021R1_037.ab1   140 
  110    USDA021F_F05_BE443332Ta14P043H05P004B021F1_037.ab1    55 
  126  C USDA021R_F05_BE443332Ta14P043H05P004B021R1_037.ab1   103 
  130    USDA021F_F05_BE443332Ta14P043H05P004B021F1_037.ab1    75 
  134  C USDA021R_F05_BE443332Ta14P043H05P004B021R1_037.ab1    95 
  142    USDA021F_F05_BE443332Ta14P043H05P004B021F1_037.ab1    87 
  146  C USDA021R_F05_BE443332Ta14P043H05P004B021R1_037.ab1    83 
  158    USDA021F_F05_BE443332Ta14P043H05P004B021F1_037.ab1   103 
  170  C USDA021R_F05_BE443332Ta14P043H05P004B021R1_037.ab1    59 
  174    USDA021F_F05_BE443332Ta14P043H05P004B021F1_037.ab1   119 
Contig length: old 266, new 267

Contig length: old 267, new 267
New start: 0