No. words: 421; after pruning: 395


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.2 -0.2 (1,1:158)  142  0.00 1.25 1.25  USDA021F_C06_BE443332Ta19P043H05P004B021F1_044.ab1        1   160 (38)  C USDA021R_C06_BE443332Ta19P043H05P004B021R1_044.ab1   (63)   160     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  68 nodes

 36 str. conn. components

Path
    1  C USDA021R_C06_BE443332Ta19P043H05P004B021R1_044.ab1   223 
  106    USDA021F_C06_BE443332Ta19P043H05P004B021F1_044.ab1    41 
  118  C USDA021R_C06_BE443332Ta19P043H05P004B021R1_044.ab1   106 
  134    USDA021F_C06_BE443332Ta19P043H05P004B021F1_044.ab1    69 
  142  C USDA021R_C06_BE443332Ta19P043H05P004B021R1_044.ab1    82 
  154    USDA021F_C06_BE443332Ta19P043H05P004B021F1_044.ab1    89 
Contig length: old 262, new 263

Contig length: old 263, new 263
New start: 0