No. words: 436; after pruning: 410


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -1.2 -1.2 (1,1:173)  157  0.00 1.14 1.14  USDA021F_B04_BE443332Td02P043H05P004B021F1_030.ab1        1   175 (37)  C USDA021R_B04_BE443332Td02P043H05P004B021R1_030.ab1   (49)   175     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-1.2       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C USDA021R_B04_BE443332Td02P043H05P004B021R1_030.ab1   224 
  106    USDA021F_B04_BE443332Td02P043H05P004B021F1_030.ab1    55 
  114  C USDA021R_B04_BE443332Td02P043H05P004B021R1_030.ab1   111 
  138    USDA021F_B04_BE443332Td02P043H05P004B021F1_030.ab1    87 
  146  C USDA021R_B04_BE443332Td02P043H05P004B021R1_030.ab1    79 
  170    USDA021F_B04_BE443332Td02P043H05P004B021F1_030.ab1   119 
Contig length: old 262, new 263

Contig length: old 263, new 263
New start: 0