No. words: 422; after pruning: 396


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.1 -0.1 (1,1:159)  143  0.00 1.24 1.24  USDA021F_F04_BE443332Td06P043H05P004B021F1_022.ab1        1   161 (37)  C USDA021R_F04_BE443332Td06P043H05P004B021R1_022.ab1   (63)   161     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.1       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  70 nodes

 37 str. conn. components

Path
    1  C USDA021R_F04_BE443332Td06P043H05P004B021R1_022.ab1   224 
  182    USDA021F_F04_BE443332Td06P043H05P004B021F1_022.ab1   117 
Contig length: old 262, new 263

Contig length: old 263, new 263
New start: 0