No. words: 447; after pruning: 421


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    

Pass: 3
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 4
             Gap  Score    
Merge:(0)    0   -0.8 -0.8 (1,1:172)  156  0.00 1.73 0.58  USDA021F_A05_BE443332Td09P043H05P004B021F1_047.ab1        1   173 (50)  C USDA021R_A05_BE443332Td09P043H05P004B021R1_047.ab1   (49)   175     1 *

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
-0.8       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Read equivalence class histogram:
    1    2

Chimera merges: 


Contig 1:  74 nodes

 39 str. conn. components

Path
    1  C USDA021R_A05_BE443332Td09P043H05P004B021R1_047.ab1   224 
  106    USDA021F_A05_BE443332Td09P043H05P004B021F1_047.ab1    54 
  118  C USDA021R_A05_BE443332Td09P043H05P004B021R1_047.ab1   107 
  154    USDA021F_A05_BE443332Td09P043H05P004B021F1_047.ab1   102 
Contig length: old 274, new 275

Contig length: old 275, new 275
New start: 0