No. words: 1362; after pruning: 1336


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 5.1 (1,1:1098)  248  1.14 0.00 0.00  USDA008F_E07_BE443531At01P017D04P017D10F1_055.ab1      444   706 (0)  C USDA008R_E07_BE443531At01P017D04P017D10R1_055.ab1   (0)   656   394 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  124 nodes

 64 str. conn. components

Path
    1    USDA008F_E07_BE443531At01P017D04P017D10F1_055.ab1     1 
  471  C USDA008R_E07_BE443531At01P017D04P017D10R1_055.ab1   629 
  475    USDA008F_E07_BE443531At01P017D04P017D10F1_055.ab1   475 
  483  C USDA008R_E07_BE443531At01P017D04P017D10R1_055.ab1   617 
  499    USDA008F_E07_BE443531At01P017D04P017D10F1_055.ab1   499 
  503  C USDA008R_E07_BE443531At01P017D04P017D10R1_055.ab1   597 
  527    USDA008F_E07_BE443531At01P017D04P017D10F1_055.ab1   527 
  531  C USDA008R_E07_BE443531At01P017D04P017D10R1_055.ab1   569 
  551    USDA008F_E07_BE443531At01P017D04P017D10F1_055.ab1   551 
  555  C USDA008R_E07_BE443531At01P017D04P017D10R1_055.ab1   545 
  599    USDA008F_E07_BE443531At01P017D04P017D10F1_055.ab1   599 
  603  C USDA008R_E07_BE443531At01P017D04P017D10R1_055.ab1   497 
Contig length: old 1099, new 1099

Contig length: old 1099, new 1099
New start: 0