No. words: 1246; after pruning: 1220


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 1.0 (1,1:1124)  105  4.13 0.00 0.00  USDA008F_F07_BE443531At02P017D04P017D10F1_053.ab1      506   626 (0)  C USDA008R_F07_BE443531At02P017D04P017D10R1_053.ab1   (0)   620   500 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  48 nodes

 26 str. conn. components

Path
    1    USDA008F_F07_BE443531At02P017D04P017D10F1_053.ab1     1 
  509  C USDA008R_F07_BE443531At02P017D04P017D10R1_053.ab1   617 
  532    USDA008F_F07_BE443531At02P017D04P017D10F1_053.ab1   532 
  544  C USDA008R_F07_BE443531At02P017D04P017D10R1_053.ab1   582 
  557    USDA008F_F07_BE443531At02P017D04P017D10F1_053.ab1   557 
  561  C USDA008R_F07_BE443531At02P017D04P017D10R1_053.ab1   565 
  609    USDA008F_F07_BE443531At02P017D04P017D10F1_053.ab1   609 
  617  C USDA008R_F07_BE443531At02P017D04P017D10R1_053.ab1   509 
Contig length: old 1125, new 1125

Contig length: old 1125, new 1125
New start: 0