No. words: 1153; after pruning: 1127


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 2.1 (1,1:1029)  113  0.82 0.82 0.00  USDA008F_H08_BE443531Ld10P017D04P017D10F1_050.ab1      591   712 (0)  C USDA008R_H08_BE443531Ld10P017D04P017D10R1_050.ab1   (0)   441   319 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  56 nodes

 30 str. conn. components

Path
    1    USDA008F_H08_BE443531Ld10P017D04P017D10F1_050.ab1     1 
  615  C USDA008R_H08_BE443531Ld10P017D04P017D10R1_050.ab1   416 
  631    USDA008F_H08_BE443531Ld10P017D04P017D10F1_050.ab1   631 
  643  C USDA008R_H08_BE443531Ld10P017D04P017D10R1_050.ab1   388 
Contig length: old 1030, new 1030

Contig length: old 1030, new 1031
New start: 0 
I Change at: 609; seg lengths: entry 1, contig 0