No. words: 1644; after pruning: 1618


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.0 (1,1:900)  731  0.27 0.00 0.00  USDA018F_C02_BE443531Ta11P029G10P017D101F1_012.ab1      151   893 (0)  C USDA018R_C02_BE443531Ta11P029G10P017D101R1_012.ab1   (0)   751     9 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1    USDA018F_C02_BE443531Ta11P029G10P017D101F1_012.ab1     1 
  298  C USDA018R_C02_BE443531Ta11P029G10P017D101R1_012.ab1   604 
  306    USDA018F_C02_BE443531Ta11P029G10P017D101F1_012.ab1   306 
  334  C USDA018R_C02_BE443531Ta11P029G10P017D101R1_012.ab1   568 
  814    USDA018F_C02_BE443531Ta11P029G10P017D101F1_012.ab1   814 
  822  C USDA018R_C02_BE443531Ta11P029G10P017D101R1_012.ab1    80 
  850    USDA018F_C02_BE443531Ta11P029G10P017D101F1_012.ab1   850 
  869  C USDA018R_C02_BE443531Ta11P029G10P017D101R1_012.ab1    33 
Contig length: old 901, new 901

Contig length: old 901, new 901
New start: 0