No. words: 1659; after pruning: 1633


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.6 (1,1:898)  743  0.13 0.00 0.00  USDA018F_G02_BE443531Ta15P029G10P017D101F1_004.ab1      149   899 (9)  C USDA018R_G02_BE443531Ta15P029G10P017D101R1_004.ab1   (0)   751     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  374 nodes

 189 str. conn. components

Path
    1    USDA018F_G02_BE443531Ta15P029G10P017D101F1_004.ab1     1 
  332  C USDA018R_G02_BE443531Ta15P029G10P017D101R1_004.ab1   568 
  364    USDA018F_G02_BE443531Ta15P029G10P017D101F1_004.ab1   364 
  492  C USDA018R_G02_BE443531Ta15P029G10P017D101R1_004.ab1   408 
  652    USDA018F_G02_BE443531Ta15P029G10P017D101F1_004.ab1   652 
  656  C USDA018R_G02_BE443531Ta15P029G10P017D101R1_004.ab1   244 
  895    USDA018F_G02_BE443531Ta15P029G10P017D101F1_004.ab1   895 
Contig length: old 908, new 908

Contig length: old 908, new 908
New start: 0