No. words: 1835; after pruning: 1809


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 19.6 (1,1:891)  873  0.11 0.00 0.11  USDA018F_E03_BE443531Ta21P029G10P017D101F1_023.ab1        1   892 (16)  C USDA018R_E03_BE443531Ta21P029G10P017D101R1_023.ab1   (36)   891     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  442 nodes

 223 str. conn. components

Path
    1  C USDA018R_E03_BE443531Ta21P029G10P017D101R1_023.ab1   927 
   48    USDA018F_E03_BE443531Ta21P029G10P017D101F1_023.ab1    12 
  520  C USDA018R_E03_BE443531Ta21P029G10P017D101R1_023.ab1   408 
  921    USDA018F_E03_BE443531Ta21P029G10P017D101F1_023.ab1   886 
Contig length: old 943, new 943

Contig length: old 943, new 944
New start: 0 
I Change at: 914; seg lengths: entry 1, contig 0