No. words: 1656; after pruning: 1630


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 15.1 (1,1:880)  730  0.00 0.00 0.13  USDA018F_F03_BE443531Ta22P029G10P017D101F1_021.ab1      142   882 (34)  C USDA018R_F03_BE443531Ta22P029G10P017D101R1_021.ab1   (0)   740     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  1       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1    USDA018F_F03_BE443531Ta22P029G10P017D101F1_021.ab1     1 
  481  C USDA018R_F03_BE443531Ta22P029G10P017D101R1_021.ab1   401 
  878    USDA018F_F03_BE443531Ta22P029G10P017D101F1_021.ab1   879 
Contig length: old 916, new 915

Contig length: old 915, new 915
New start: 0