No. words: 1624; after pruning: 1584


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.2 (1,1:869)  725  0.27 0.00 0.00  USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1      136   870 (19)  C USDA018R_A01_BE443531Td01P029G10P017D101R1_015.ab1   (0)   735     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  364 nodes

 184 str. conn. components

Path
    1    USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1     1 
  295  C USDA018R_A01_BE443531Td01P029G10P017D101R1_015.ab1   576 
  351    USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1   351 
  407  C USDA018R_A01_BE443531Td01P029G10P017D101R1_015.ab1   464 
  527    USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1   527 
  531  C USDA018R_A01_BE443531Td01P029G10P017D101R1_015.ab1   340 
  539    USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1   539 
  579  C USDA018R_A01_BE443531Td01P029G10P017D101R1_015.ab1   292 
  619    USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1   619 
  623  C USDA018R_A01_BE443531Td01P029G10P017D101R1_015.ab1   248 
  798    USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1   798 
  802  C USDA018R_A01_BE443531Td01P029G10P017D101R1_015.ab1    69 
  867    USDA018F_A01_BE443531Td01P029G10P017D101F1_015.ab1   867 
Contig length: old 889, new 889

Contig length: old 889, new 889
New start: 0