No. words: 1618; after pruning: 1592


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:890)  721  0.00 0.00 0.00  USDA018F_C01_BE443531Td03P029G10P017D101F1_011.ab1      142   868 (0)  C USDA018R_C01_BE443531Td03P029G10P017D101R1_011.ab1   (0)   750    24 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  366 nodes

 185 str. conn. components

Path
    1    USDA018F_C01_BE443531Td03P029G10P017D101F1_011.ab1     1 
  325  C USDA018R_C01_BE443531Td03P029G10P017D101R1_011.ab1   567 
Contig length: old 891, new 891

Contig length: old 891, new 891
New start: 0