No. words: 1825; after pruning: 1799


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    4    0.0 17.3 (1,1:878)  846  0.11 0.23 0.11  USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1        5   878 (32)  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   (40)   875     1 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 4       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  428 nodes

 216 str. conn. components

Path
    1  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   915 
   52    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1    16 
   56  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   860 
   90    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1    53 
   94  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   822 
   98    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1    61 
  306  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   610 
  310    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1   273 
  366  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   550 
  374    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1   337 
  526  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   390 
  534    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1   497 
  542  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1   374 
  878    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1   841 
  887  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1    29 
  895    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1   858 
  899  C USDA018R_D01_BE443531Td04P029G10P017D101R1_009.ab1    17 
  903    USDA018F_D01_BE443531Td04P029G10P017D101F1_009.ab1   866 
Contig length: old 946, new 947

Contig length: old 947, new 947
New start: 0