No. words: 1808; after pruning: 1782


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    3    0.0 19.4 (1,1:890)  865  0.00 0.00 0.00  USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1        1   877 (3)  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   (37)   891    15 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 3       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  440 nodes

 222 str. conn. components

Path
    1  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   928 
   41    USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1     4 
  301  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   628 
  305    USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1   268 
  341  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   588 
  345    USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1   308 
  361  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   568 
  389    USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1   352 
  517  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   412 
  529    USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1   492 
  537  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   392 
  553    USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1   516 
  565  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   364 
  593    USDA018F_E01_BE443531Td05P029G10P017D101F1_007.ab1   556 
  597  C USDA018R_E01_BE443531Td05P029G10P017D101R1_007.ab1   332 
Contig length: old 928, new 928

Contig length: old 928, new 928
New start: 0