No. words: 1633; after pruning: 1593


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.1 (1,1:906)  719  0.14 0.00 0.00  USDA018F_A02_BE443531Td09P029G10P017D101F1_016.ab1      158   883 (0)  C USDA018R_A02_BE443531Td09P029G10P017D101R1_016.ab1   (0)   750    25 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  362 nodes

 183 str. conn. components

Path
    1    USDA018F_A02_BE443531Td09P029G10P017D101F1_016.ab1     1 
  342  C USDA018R_A02_BE443531Td09P029G10P017D101R1_016.ab1   566 
  350    USDA018F_A02_BE443531Td09P029G10P017D101F1_016.ab1   350 
  386  C USDA018R_A02_BE443531Td09P029G10P017D101R1_016.ab1   522 
Contig length: old 907, new 907

Contig length: old 907, new 907
New start: 0