No. words: 1641; after pruning: 1615


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 16.4 (1,1:898)  731  0.00 0.00 0.13  USDA018F_B02_BE443531Td10P029G10P017D101F1_014.ab1      150   891 (0)  C USDA018R_B02_BE443531Td10P029G10P017D101R1_014.ab1   (0)   750    10 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  370 nodes

 187 str. conn. components

Path
    1    USDA018F_B02_BE443531Td10P029G10P017D101F1_014.ab1     1 
  333  C USDA018R_B02_BE443531Td10P029G10P017D101R1_014.ab1   567 
  365    USDA018F_B02_BE443531Td10P029G10P017D101F1_014.ab1   365 
  493  C USDA018R_B02_BE443531Td10P029G10P017D101R1_014.ab1   407 
Contig length: old 899, new 899

Contig length: old 899, new 900
New start: 0 
I Change at: 886; seg lengths: entry 1, contig 0