No. words: 1714; after pruning: 1688


Histogram of relative pair offsets, for read pairs with multiple alignments:

Pass 1
             Gap  Score    

Pass: 1
#reads  #contigs (not counting singlets)
    1      2

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Pass 3
             Gap  Score    
Merge:(0)    0    0.0 14.8 (1,1:970)  708  0.67 0.00 0.13  USDA005R3_C05_BE443588As01P004A05A11R3_043.ab1       50   792 (0)  C USDA005F3_C05_BE443588As01P004A05A11F3_043.ab1   (0)   922   181 *

Pass: 3
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score
0.0       1        0

Gap   # merges  # failures
 size
 0       1        0

Offset
  0       1 

Pass 4
             Gap  Score    

Pass: 4
#reads  #contigs (not counting singlets)
    2      1

N.B. Following not based on all pairs!!

Lowest   # merges  # failures
LLR score

Gap   # merges  # failures
 size

Offset

Read equivalence class histogram:
    2    1

Chimera merges: 


Contig 1:  358 nodes

 181 str. conn. components

Path
    1    USDA005R3_C05_BE443588As01P004A05A11R3_043.ab1     1 
  340  C USDA005F3_C05_BE443588As01P004A05A11F3_043.ab1   633 
  348    USDA005R3_C05_BE443588As01P004A05A11R3_043.ab1   348 
  352  C USDA005F3_C05_BE443588As01P004A05A11F3_043.ab1   621 
  356    USDA005R3_C05_BE443588As01P004A05A11R3_043.ab1   356 
  364  C USDA005F3_C05_BE443588As01P004A05A11F3_043.ab1   609 
  408    USDA005R3_C05_BE443588As01P004A05A11R3_043.ab1   408 
  412  C USDA005F3_C05_BE443588As01P004A05A11F3_043.ab1   561 
Contig length: old 971, new 972

Contig length: old 972, new 972
New start: 0